modified: CMakeLists.txt

modified:   INSTALL.md
	modified:   README.md
	modified:   build_release_zip.py
	modified:   compute.py
	new file:   doc/index.html
	modified:   dynamics.py
	modified:   engines/c/main.c
	modified:   engines/cpp/main.cpp
	modified:   engines/fortran/main.f90
	modified:   examples/case01/input/coord.txt
	renamed:    examples/case01/input/parameters.yaml -> examples/case01/input/input.txt
	modified:   examples/case01/run_dynamics.py
	new file:   examples/case02/input/bond.txt
	new file:   examples/case02/input/connection.txt
	new file:   examples/case02/input/coord.txt
	new file:   examples/case02/input/input.txt
	new file:   examples/case02/run_dynamics.py

CMakeLists.txt

@@ -53,9 +53,11 @@ function(add_engine_target name lang src)
         add_executable(${name} ${src})
     endif()
 
-    # 输出到 engines/<name>/build/（Python 调度器期望的位置）
+    # 从源码路径推导输出目录：engines/c/main.c → engines/c/build/
+    # 这样 Python 的 run_engine() 能在固定路径找到可执行文件
+    string(REGEX REPLACE "/[^/]+$" "/build" _out_subdir "${src}")
     set_target_properties(${name} PROPERTIES
-        RUNTIME_OUTPUT_DIRECTORY "${CMAKE_SOURCE_DIR}/engines/${name}/build"
+        RUNTIME_OUTPUT_DIRECTORY "${CMAKE_SOURCE_DIR}/${_out_subdir}"
     )
     # macOS 上禁止生成 .app 包（命令行工具不需要）
     set_target_properties(${name} PROPERTIES