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modified:   INSTALL.md
	modified:   README.md
	modified:   build_release_zip.py
	modified:   compute.py
	new file:   doc/index.html
	modified:   dynamics.py
	modified:   engines/c/main.c
	modified:   engines/cpp/main.cpp
	modified:   engines/fortran/main.f90
	modified:   examples/case01/input/coord.txt
	renamed:    examples/case01/input/parameters.yaml -> examples/case01/input/input.txt
	modified:   examples/case01/run_dynamics.py
	new file:   examples/case02/input/bond.txt
	new file:   examples/case02/input/connection.txt
	new file:   examples/case02/input/coord.txt
	new file:   examples/case02/input/input.txt
	new file:   examples/case02/run_dynamics.py

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input

modified: CMakeLists.txt

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run_dynamics.py

modified: CMakeLists.txt

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